Multi-level Visualization of Concurrent and Distributed Computation in Erlang

This paper describes a prototype visualization system for concurrent and distributed applications programmed using Erlang, providing two levels of granularity of view. Both visualizations are animated to show the dynamics of aspects of the computation. At the low level, we show the concurrent behaviour of the Erlang schedulers on a single instance of the Erlang virtual machine, which we call an Erlang node. Typically there will be one scheduler per core on a multicore system. Each scheduler maintains a run queue of processes to execute, and we visualize the migration of Erlang concurrent processes from one run queue to another as work is redistributed to fully exploit the hardware. The schedulers are shown as a graph with a circular layout. Next to each scheduler we draw a variable length bar indicating the current size of the run queue for the scheduler. At the high level, we visualize the distributed aspects of the system, showing interactions between Erlang nodes as a dynamic graph drawn with a force model. Speci?cally we show message passing between nodes as edges and lay out nodes according to their current connections. In addition, we also show the grouping of nodes into “s_groups” using an Euler diagram drawn with circles

Cell design, management and continuous improvement

A cellular manufacturing system is a shop floor that has been organised into groups of dissimilar machines producing groups of similar parts. Each group of machines is called a cell and each group of parts is called a part family. The main advantage of a cellular manufacturing system is low material handling, since ideally, a part need only travel to the cell it belongs to in order to be manufactured. If a cell can manufacture its part family without any member of that part family having to travel to another cell, then that cell is said to be independent. In reality, cells are rarely independent and this causes many complications when trying to design a cellular manufacturing system. To address these complications, a strategy for cell design, management and continuous improvement was developed. This comprises three stages: (i) Determine cell configurations. (ii) Position cells and the workstations within them. (iii) Carry out Capability Analysis to identify targets for continuous improvement. Black Box Clustering is used to determine cell configurations by clustering a workstation-part matrix representation of routings. The Cellect layout tools identify the best position for each cell and the relative positions of the workstations within them based on material handling costs. This data combined with user interaction can be used to identify the precise locations of individual workstations. Capability Analysis is a methodology developed to assess groups of performance measures that should b

Possible quadrupolar nematic phase in the frustrated spin chain LiCuSbO4_4: an NMR investigation

The frustrated one-dimensional (1D) quantum magnet LiCuSbO$_4$ is one rare realization of the $J_1-J_2$ spin chain model with an easily accessible saturation field, formerly estimated to 12~T. Exotic multipolar nematic phases were theoretically predicted in such compounds just below the saturation field, but without unambiguous experimental observation so far. In this paper we present extensive experimental research of the compound in the wide temperature (30mK$-$300K) and field (0$-$13.3T) range by muon spin rotation ($\mu$SR), $^7$Li nuclear magnetic resonance (NMR) and magnetic susceptibility (SQUID). $\mu$SR experiments in zero magnetic field demonstrate the absence of long range 3D ordering down to 30mK. Together with former heat capacity data [S.E. Dutton \emph{et al}, Phys. Rev. Lett. 108, 187206 (2012)], magnetic susceptibility measurements suggest short range correlated vector chiral phase in the field range $0-4$T. In the intermediate field values (5$-$12T), the system enters in a 3D ordered spin density wave phase with 0.75$\mu_B$ per copper site at lowest temperatures (125mK), estimated by NMR. At still higher field, the magnetization is found to be saturated above 13T where the spin lattice $T_1^{-1}$ relaxation reveals a spin gap estimated to 3.2(2)K. We narrow down the possibility of observing a multipolar nematic phase to the range 12.5$-$13T.Comment: 12 pages, 15 figure

Cognitive impairment and decline in cognitively normal older adults with high amyloid-β: A meta-analysis

AbstractIntroductionThis meta-analysis aimed to characterize the nature and magnitude of amyloid (Aβ)-related cognitive impairment and decline in cognitively normal (CN) older individuals.MethodMEDLINE Ovid was searched from 2012 to June 2016 for studies reporting relationships between cerebrospinal fluid or positron emission tomography (PET) Aβ levels and cognitive impairment (cross-sectional) and decline (longitudinal) in CN older adults. Neuropsychological data were classified into domains of episodic memory, executive function, working memory, processing speed, visuospatial function, semantic memory, and global cognition. Type of Aβ measure, how Aβ burden was analyzed, inclusion of control variables, and clinical criteria used to exclude participants, were considered as moderators. Random-effects models were used for analyses with effect sizes expressed as Cohen's d.ResultsA total of 38 studies met inclusion criteria contributing 30 cross-sectional (N = 5005) and 14 longitudinal (N = 2584) samples. Aβ-related cognitive impairment was observed for global cognition (d = 0.32), visuospatial function (d = 0.25), processing speed (d = 0.18), episodic memory, and executive function (both d's = 0.15), with decline observed for global cognition (d = 0.30), semantic memory (d = 0.28), visuospatial function (d = 0.25), and episodic memory (d = 0.24). Aβ-related impairment was moderated by age, amyloid measure, type of analysis, and inclusion of control variables and decline moderated by amyloid measure, type of analysis, inclusion of control variables, and exclusion criteria used.DiscussionCN older adults with high Aβ show a small general cognitive impairment and small to moderate decline in episodic memory, visuospatial function, semantic memory, and global cognition

Seasonal and spatial variations in the ocean-coupled ambient wavefield of the Ross Ice Shelf

© The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Baker, M. G., Aster, R. C., Anthony, R. E., Chaput, J., Wiens, D. A., Nyblade, A., Bromirski, P. D., Gerstoft, P., & Stephen, R. A. Seasonal and spatial variations in the ocean-coupled ambient wavefield of the Ross Ice Shelf. Journal of Glaciology, 65(254), (2019): 912-925, doi:10.1017/jog.2019.64.The Ross Ice Shelf (RIS) is host to a broadband, multimode seismic wavefield that is excited in response to atmospheric, oceanic and solid Earth source processes. A 34-station broadband seismographic network installed on the RIS from late 2014 through early 2017 produced continuous vibrational observations of Earth's largest ice shelf at both floating and grounded locations. We characterize temporal and spatial variations in broadband ambient wavefield power, with a focus on period bands associated with primary (10–20 s) and secondary (5–10 s) microseism signals, and an oceanic source process near the ice front (0.4–4.0 s). Horizontal component signals on floating stations overwhelmingly reflect oceanic excitations year-round due to near-complete isolation from solid Earth shear waves. The spectrum at all periods is shown to be strongly modulated by the concentration of sea ice near the ice shelf front. Contiguous and extensive sea ice damps ocean wave coupling sufficiently so that wintertime background levels can approach or surpass those of land-sited stations in Antarctica.This research was supported by NSF grants PLR-1142518, 1141916, 1142126, 1246151 and 1246416. JC was additionally supported by Yates funds in the Colorado State University Department of Mathematics. PDB also received support from the California Department of Parks and Recreation, Division of Boating and Waterways under contract 11-106-107. We thank Reinhard Flick and Patrick Shore for their support during field work, Tom Bolmer in locating stations and preparing maps, and the US Antarctic Program for logistical support. The seismic instruments were provided by the Incorporated Research Institutions for Seismology (IRIS) through the PASSCAL Instrument Center at New Mexico Tech. Data collected are available through the IRIS Data Management Center under RIS and DRIS network code XH. The PSD-PDFs presented in this study were processed with the IRIS Noise Tool Kit (Bahavar and others, 2013). The facilities of the IRIS Consortium are supported by the National Science Foundation under Cooperative Agreement EAR-1261681 and the DOE National Nuclear Security Administration. The authors appreciate the support of the University of Wisconsin-Madison Automatic Weather Station Program for the data set, data display and information; funded under NSF grant number ANT-1543305. The Ross Ice Shelf profiles were generated using the Antarctic Mapping Tools (Greene and others, 2017). Regional maps were generated with the Generic Mapping Tools (Wessel and Smith, 1998). Topography and bathymetry data for all maps in this study were sourced from the National Geophysical Data Center ETOPO1 Global Relief Model (doi:10.7289/V5C8276M). We thank two anonymous reviewers for suggestions on the scope and organization of this paper

Improved identification of O-linked glycopeptides from ETD data with optimized scoring for different charge states and cleavage specificities

This article describes the effect of re-interrogation of electron-transfer dissociation (ETD) data with newly developed analytical tools. MS/MS-based characterization of O-linked glycopeptides is discussed using data acquired from a complex mixture of O-linked glycopeptides, featuring mucin core 1-type carbohydrates with and without sialic acid, as well as after partial deglycosylation to leave only the core GalNAc units (Darula and Medzihradszky in Mol Cell Proteomics 8:2515, 2009). Information content of collision-induced dissociation spectra generated in collision cell (in QqTOF instruments) and in ion traps is compared. Interpretation of the corresponding ETD data using Protein Prospector is also presented. Search results using scoring based on the frequency of different fragment ions occurring in ETD spectra of tryptic peptides are compared with results obtained after ion weightings were adjusted to accommodate differential ion frequencies in spectra of differing charge states or cleavage specificities. We show that the improved scoring is more than doubled the glycopeptide assignments under very strict acceptance criteria. This study illustrates that “old” proteomic data may yield significant new information when re-interrogated with new, improved tools

Coupling between a glacier and a soft bed: I. A relation between effective pressure and local shear stress determined from till elasticity

To predict the distribution of motion beneath glaciers on soft beds, the strength of the coupling between the ice and the bed and its variation with effective pressure must be known. A record of shear strain, acquired with a tiltmeter emplaced in till beneath Storglaciären, Sweden, indicates that fluctuations in water pressure cause variations in the local shear stress on the bed and that the bed deforms elastically in response to these variations. To estimate the shear stress from the elastic component of the total shear strain, the shear modulus of the till was measured in relaxation tests conducted in the laboratory with a ring-shear device. After accounting for the elastic compliance of the device, these tests yielded shear moduli of about 1000 and 1800 kPa at confining pressures of 85 and 280 kPa, respectively. These values are comparable to those of other granular materials undergoing recoverable shear strains of the same magnitude. The local shear stress on the till, calculated by applying the measured shear moduli to the tilt record, scales with ? e 1.7, where P e is the effective pressure. This relation implies that as P e decreases at the ice/till interface, shear stresses on the till are reduced and concentrated elsewhere on the bed, perhaps where the till is absent or the glacier is frozen to the bed. When compared with the strength of the till determined from ring-shear tests, this relation also accounts for the lack of permanent deformation at depth in the bed during periods of low P e and indicates that most basal motion was by sliding or ploughing

Speciation within Bonneted Bats (Genus \u3ci\u3eEumops\u3c/i\u3e): The Complexity of Morphological, Mitochondrial, and Nuclear Data Sets in Systematics

We phylogenetically analyze 705 base pairs of the cytochrome-b gene and 351 amplified fragment length polymorphism (AFLP) bands from populations of the karyotypically variable Wagner’s bonneted bat, Eumops glaucinus, and the Florida bonneted bat, Eumops floridanus (Chiroptera: Molossidae). Three karyotypes have been documented across the range of E. glaucinus, and we report that the karyotype from Cuba is morphologically similar to that from Jamaica. A 4th karyotype is present in specimens from western Ecuador. Three distinct lineages are present in both the cytochrome-b and AFLP trees. One lineage is restricted to western Ecuador and exhibits cytochrome-b divergence values comparable to the values seen between recognized species of Eumops, suggesting that this lineage represents a distinct species. The other 2 lineages are distributed in disjunct areas: Paraguay and Venezuela; and Mexico, the Caribbean, and the United States. Specimens of E. floridanus are morphologically distinct from E. glaucinus, but cannot be distinguished by examination of cytochrome-b or AFLP DNA data. We conclude that there are 4 species in the E. glaucinus complex— E. glaucinus (South America east of the Andes), E. ferox (Caribbean, Mexico, and Central America), E. floridanus in south Florida, and an unnamed taxon in western Ecuador. Speciation is a complex process and no single mechanism, model, concept, or definition is likely to cover all the diverse patterns observed

Speciation within bonneted bats (genus Eumops): The complexity of morphological, mitochondrial, and nuclear datasets in systematics

We phylogenetically analyze cytochrome-b gene sequences and Amplified Fragment Length Polymorphisms (AFLPs) from populations of the karyotypically variable Wagner’s bonneted bat, Eumops glaucinus, and the Florida bonneted bat, Eumops floridanus (Chiroptera: Molossidae). Three karyotypes have been documented previously across the range of E. glaucinus, and we report that the karyotype from Cuba is morphologically similar to that found in specimens from Jamaica. A 4th karyotype (described herein) is present in specimens from western Ecuador. DNA sequence variation within 705 base pairs of the cytochrome-b gene from 47 specimens from Florida, Cuba, Jamaica, Mexico, Venezuela, Ecuador, and Paraguay were examined and analyzed using maximum likelihood and Bayesian analyses. Additionally, 351 AFLP bands from 23 specimens were phylogenetically analyzed. Three distinct lineages are present in both the cytochrome-b and AFLP trees. One clade is restricted to western Ecuador and has a 7-8% cytochrome b sequence divergence from all other haplotypes of the species complex. The other 2 lineages have cytochrome-b divergences > 3–4% and are distributed in disjunct areas: 1) Paraguay and Venezuela; and 2) Mexico, the Caribbean, and the United States. The cytochrome b divergence between populations of E. glaucinus west of the Andes and all other populations of E. glaucinus is comparable to that between recognized species of Eumops, suggesting that the Ecuadorian bonneted bats represent a distinct species. Specimens of E. floridanus are morphologically distinct from E. glaucinus, but cannot be distinguished by cytochrome-b or AFLP DNA data. We conclude that there are 4 species in the Eumops glaucinus complex—Eumops glaucinus (in South America east of the Andes), E. ferox (in the Caribbean, Mexico, and Central America), E. floridanus in south Florida, and an unnamed taxon in western Ecuador. Speciation is a complex process and no single mechanism, model, concept, or definition is likely to cover all the diverse patterns observed

Carboxypeptidase A6 in Zebrafish Development and Implications for VIth Cranial Nerve Pathfinding

Carboxypeptidase A6 (CPA6) is an extracellular protease that cleaves carboxy-terminal hydrophobic amino acids and has been implicated in the defective innervation of the lateral rectus muscle by the VIth cranial nerve in Duane syndrome. In order to investigate the role of CPA6 in development, in particular its potential role in axon guidance, the zebrafish ortholog was identified and cloned. Zebrafish CPA6 was secreted and interacted with the extracellular matrix where it had a neutral pH optimum and specificity for C-terminal hydrophobic amino acids. Transient mRNA expression was found in newly formed somites, pectoral fin buds, the stomodeum and a conspicuous condensation posterior to the eye. Markers showed this tissue was not myogenic in nature. Rather, the CPA6 localization overlapped with a chondrogenic site which subsequently forms the walls of a myodome surrounding the lateral rectus muscle. No other zebrafish CPA gene exhibited a similar expression profile. Morpholino-mediated knockdown of CPA6 combined with retrograde labeling and horizontal eye movement analyses demonstrated that deficiency of CPA6 alone did not affect either VIth nerve development or function in the zebrafish. We suggest that mutations in other genes and/or enhancer elements, together with defective CPA6 expression, may be required for altered VIth nerve pathfinding. If mutations in CPA6 contribute to Duane syndrome, our results also suggest that Duane syndrome can be a chondrogenic rather than a myogenic or neurogenic developmental disorder